Bioinformatik, HPC 

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2026

• 2026/02

  Postma, A., Klynsmith, L., Duong, T.A., Allison, J.D., Smidt, W., Waterhouse, R.M., Lesny, P., Oeyen, J.P., Petersen, M., Martin, S., Liu, S., Zhou, X., Ziesmann, T., Donath, A., Mayer, C., Misof, B., Niehuis, O., Peters, R.S., Podsiadlowski, L., Coetzee, M.P.A., Joubert, F., Slippers, B.

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  Genome and transcriptome‐based identification and expression profiling of chemosensory gene families across developmental stages and tissues in Sirex noctilio (Hymenoptera: Siricidae)

  Insect Molecular Biology

  https://doi.org/

2025

• 2025/10

  Bleidorn, C., Sandberg, F., Martin, S., Vogler, A.P., Podsiadlowski, L.

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  The untapped potential of short-read sequencing in biodiversity research

  Trends in Genetics

  https://doi.org/

• 2025/05

  Letsch, H., Greve, C., Hundsdoerfer, A.K., Irisarri, I., Moore, J.M., Espeland, M., Wanke, S., Arifin, U., Blom, M.P.K., Corrales, C., Donath, A., Fritz, U., Köhler, G., Kück, P., Lemer, S., Mengual, X., Salas, N.M., Meusemann, K., Palandačić, A., Printzen, C., Sigwart, J.D., Silva-Brandão, K.L., Simões, M., Stange, M., Suh, A., Szucsich, N., Tilic, E., Töpfer, T., Böhne, A., Janke, A., Pauls, S.

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  Type genomics: a framework for integrating genomic data into biodiversity and taxonomic research

  Systematic Biology, 6, 74

  https://doi.org/

• 2025/03

  Möhring, J., Hüllen, S., Martin, S., Mokodongan, D.F., Wowor, D., Schwarzer, J., Herder, F.

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  Increased phenotypic diversity as a consequence of ecological opportunity in the island radiation of Sulawesi ricefishes (Teleostei: Adrianichthyidae)

  BMC Ecology and Evolution, 1, 25

  https://doi.org/

• 2025/01

  Mozer, A., Di‐Nizo, C.B., Consul, A., Huettel, B., Jäger, R., Akintayo, A., Erhardt, C., Fenner, L., Fischer, D., Forat, S., Gimnich, F., Grobe, P., Martin, S., Nathan, V., Saeed, A., von der Mark, L., Woehle, C., Olek, K., Misof, B., Astrin, J.J.

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  FOGS: A SNPSTR Marker Database to Combat Wildlife Trafficking and a Cell Culture Bank for Ex‐Situ Conservation

  Molecular Ecology resources

  https://doi.org/

• 2025/01

  Oriowo, T.O., Chrysostomakis, I., Martin, S., Kukowka, S., Brown, T., Winkler, S., Myers, E.W., Boehne, A., Stange, M.

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  A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae: Phoxinus phoxinus) provide evidence of haplotype diversity

  Gigascience, 14

  https://doi.org/

2024

• 2024/11

  Bakker, T.C.M., Hiermes, M., Müller, B., Martin, S., Rennison, D.J., Rick, I.P.

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  Adaptive variation in opsin expression of sticklebacks from different photic habitats

  Hydrobiologia

  https://doi.org/

• 2024/08

  Hofmann, S., Podsiadlowski, L., Andermann, T., Matschiner, M., Baniya, C.B., Litvinchuk, S.N., Martin, S., Masroor, R., Yang, J., Zheng, Y., Jablonski, D., Schmidt, J.

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  The last of their kind: Is the genus Scutiger (Anura: Megophryidae) a relict element of the paleo-transhimalaya biota?

  Molecular Phylogenetics and Evolution

  https://doi.org/

• 2024/08

  Hofmann, S., Rödder, D., Andermann, T., Matschiner, M., Riedel, J., Baniya, C.B., Flecks, M., Yang, J., Jiang, K., Jianping, J., Litvinchuk, S.N., Martin, S., Masroor, R., Nothnagel, M., Vershinin, V., Zheng, Y., Jablonski, D., Schmidt, J., Podsiadlowski, L.

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  Exploring Paleogene Tibet's warm temperate environments through target enrichment and phylogenetic niche modelling of Himalayan spiny frogs (Paini, Dicroglossidae)

  Molecular ecology, 15, 33

  https://doi.org/

• 2024/07

  Frandsen, P.B., Holzenthal, R.W., Espeland, M., Breinholt, J., Thomas Thorpe, J.A., Simon, S., Kawahara, A.Y., Plotkin, D., Hotaling, S., Li, Y., Nelson, C.R., Niehuis, O., Mayer, C., Podsiadlowski, L., Donath, A., Misof, B., Moriarty Lemmon, E., Lemmon, A., Morse, J.C., Liu, S., Pauls, S.U., Zhou, X.

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  Phylogenomics recovers multiple origins of portable case making in caddisflies (Insecta: Trichoptera), nature’s underwater architects

  Proceedings - Royal Society. Biological sciences/Proceedings - Royal Society. Biological Sciences, 2026, 291

  https://doi.org/

2023

• 2023/12

  Böhne, A., Oğuzhan, Z., Chrysostomakis, I., Vitt, S., Meuthen, D., Martin, S., Kukowka, S., Thünken, T.

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  Evidence for selfing in a vertebrate from whole-genome sequencing

  Genome Research, 12, 33

  https://doi.org/

• 2023/07

  Frankenbach, S., Melo Clavijo, J., Brück, M., Bleidißel, S., Simon, M., Gasparoni, G., Lo Porto, C., Laetz, E.M.J., Greve, C., Donath, A., Pütz, L., Sickinger, C., Serôdio, J., Christa, G.

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  Shedding light on starvation in darkness in the plastid-bearing sea slug Elysia viridis (Montagu, 1804)

  Marine biology, 7, 170

  https://doi.org/

2022

• 2022/01

  Rola, M., Frankenbach, S., Bleidissel, S., Sickinger, C., Donath, A., Frommlet, J.C., Greve, C., Serôdio, J., Preisfeld, A., Melo Clavijo, J., Christa, G.

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  Cladobranchia (Gastropoda, Nudibranchia) as a Promising Model to Understand the Molecular Evolution of Photosymbiosis in Animals

  Frontiers in Marine Science, 8

  https://doi.org/

2021

• 2021/08

  Melo Clavijo, J., Drews, F., Pirritano, M., Simon, M., Salhab, A., Donath, A., Frankenbach, S., Serôdio, J., Bleidißel, S., Preisfeld, A., Christa, G.

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  The complete mitochondrial genome of the photosymbiotic sea slug Berghia stephanieae (Valdés, 2005) (Gastropoda, Nudibranchia)

  Mitochondrial DNA Part B, 8, 6

  https://doi.org/

• 2021/06

  Jasso-Martínez, J.M., Donath, A., Schulten, D., Zaldívar-Riverón, A., Sann, M.

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  Midgut transcriptome assessment of the cockroach-hunting wasp Ampulex compressa (Apoidea: Ampulicidae)

  PloS one, 6, 16

  https://doi.org/

2020

• 2020/11

  Song, H., Béthoux, O., Shin, S., Donath, A., Letsch, H., Liu, S., McKenna, D.D., Meng, G., Misof, B., Podsiadlowski, L., Zhou, X., Wipfler, B., Simon, S.

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  Author Correction: Phylogenomic analysis sheds light on the evolutionary pathways towards acoustic communication in Orthoptera

  Nature communications, 1, 11

  https://doi.org/

• 2020/11

  Meusemann, K., Trautwein, M., Friedrich, F., Beutel, R.G., Wiegmann, B.M., Donath, A., Podsiadlowski, L., Petersen, M., Niehuis, O., Mayer, C., Bayless, K.M., Shin, S., Liu, S., Hlinka, O., Minh, B.Q., Kozlov, A., Morel, B., Peters, R.S., Bartel, D., Grove, S., Zhou, X., Misof, B., Yeates, D.K.

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  Are fleas highly modified Mecoptera? Phylogenomic resolution of Antliophora (Insecta: Holometabola)

  https://doi.org/

• 2020/10

  Vasilikopoulos, A., Misof, B., Meusemann, K., Lieberz, D., Flouri, T., Beutel, R.G., Niehuis, O., Wappler, T., Rust, J., Peters, R.S., Donath, A., Podsiadlowski, L., Mayer, C., Bartel, D., Böhm, A., Liu, S., Kapli, P., Greve, C., Jepson, J.E., Liu, X., Zhou, X., Aspöck, H., Aspöck, U.

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  Correction to: An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola)

  BMC evolutionary biology, 1, 20

  https://doi.org/

• 2020/10

  Melo Clavijo, J., Frankenbach, S., Fidalgo, C., Serôdio, J., Donath, A., Preisfeld, A., Christa, G.

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  Identification of scavenger receptors and thrombospondin‐type‐1 repeat proteins potentially relevant for plastid recognition in Sacoglossa

  Ecology and Evolution, 21, 10

  https://doi.org/

• 2020/07

  Kohli, M., Letsch, H., Greve, C., Béthoux, O., Deregnaucourt, I., Liu, S., Zhou, X., Donath, A., Mayer, C., Podsiadlowski, L., Machida, R., Niehuis, O., Rust, J., Wappler, T., Yu, X., Misof, B., Ware, J.

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  How old are dragonflies and damselflies? Odonata (Insecta) transcriptomics resolve familial relationships

  https://doi.org/

• 2020/01

  Wipfler, B., Koehler, W., Frandsen, P.B., Donath, A., Liu, S., Machida, R., Misof, B., Peters, R.S., Shimizu, S., Zhou, X., Simon, S.

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  Phylogenomics changes our understanding about earwig evolution

  Systematic entomology, 3, 45

  https://doi.org/

2019

• 2019/08

  Meinzer, F., Dobler, S., Donath, A., Lohr, J.N.

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  Robust reference gene design and validation for expression studies in the large milkweed bug, Oncopeltus fasciatus, upon cardiac glycoside stress

  Gene, 710

  https://doi.org/

2018

• 2018/12

  Donath, A., Stadler, P.F.

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  Split-inducing indels in phylogenomic analysis

  Algorithms for Molecular Biology, 1, 13

  https://doi.org/

2017

• 2017/01

  Greve, C., Lui, M.R., Sivalingam, S., Ludwig, K.U., Wägele, H., Donath, A.

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  The complete mitochondrial genome of the ‘solar-powered’ sea slug Plakobranchus cf. ocellatus (Heterobranchia: Panpulmonata: Sacoglossa)

  Mitochondrial DNA Part B, 1, 2

  https://doi.org/

2015

• 2015/07

  Kjer, K.M., Ware, J.L., Rust, J., Wappler, T., Lanfear, R., Jermiin, L.S., Zhou, X., Aspöck, H., Aspöck, U., Beutel, R.G., Blanke, A., Donath, A., Flouri, T., Frandsen, P.B., Kapli, P., Kawahara, A.Y., Letsch, H., Mayer, C., McKenna, D.D., Meusemann, K., Niehuis, O., Peters, R.S., Wiegmann, B.M., Yeates, D.K., von Reumont, B.M., Stamatakis, A., Misof, B.

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  Response to Comment on “Phylogenomics resolves the timing and pattern of insect evolution”

  Science, 6247, 349

  https://doi.org/