Bioinformatics, HPC

| of

2026

• 2026/07

  Clarke, A.W., Bozek, L., Babalola, A.I., Wyrożemski, Ł., Paynter, V.M., Vinther, J., Donath, A., Olesen, J., Glenner, H., McPeek, M.A., Farrell, T.M., Fitak, R.R., Martinez, P., Fromm, B., Peterson, K.J.

  Show more...

  Genomic Contingence Beneath Ecological Convergence: The Tempo and Mode of Gene Loss in Parasitic Bilaterians

  Evolution

  https://doi.org/

• 2026/02

  Postma, A., Klynsmith, L., Duong, T.A., Allison, J.D., Smidt, W., Waterhouse, R.M., Lesny, P., Oeyen, J.P., Petersen, M., Martin, S., Liu, S., Zhou, X., Ziesmann, T., Donath, A., Mayer, C., Misof, B., Niehuis, O., Peters, R.S., Podsiadlowski, L., Coetzee, M.P.A., Joubert, F., Slippers, B.

  Show more...

  Genome and transcriptome‐based identification and expression profiling of chemosensory gene families across developmental stages and tissues in Sirex noctilio (Hymenoptera: Siricidae)

  Insect Molecular Biology

  https://doi.org/

2025

• 2025/10

  Bleidorn, C., Sandberg, F., Martin, S., Vogler, A.P., Podsiadlowski, L.

  Show more...

  The untapped potential of short-read sequencing in biodiversity research

  Trends in Genetics

  https://doi.org/

• 2025/05

  Letsch, H., Greve, C., Hundsdoerfer, A.K., Irisarri, I., Moore, J.M., Espeland, M., Wanke, S., Arifin, U., Blom, M.P.K., Corrales, C., Donath, A., Fritz, U., Köhler, G., Kück, P., Lemer, S., Mengual, X., Salas, N.M., Meusemann, K., Palandačić, A., Printzen, C., Sigwart, J.D., Silva-Brandão, K.L., Simões, M., Stange, M., Suh, A., Szucsich, N., Tilic, E., Töpfer, T., Böhne, A., Janke, A., Pauls, S.

  Show more...

  Type genomics: a framework for integrating genomic data into biodiversity and taxonomic research

  Systematic Biology, 6, 74

  https://doi.org/

• 2025/03

  Möhring, J., Hüllen, S., Martin, S., Mokodongan, D.F., Wowor, D., Schwarzer, J., Herder, F.

  Show more...

  Increased phenotypic diversity as a consequence of ecological opportunity in the island radiation of Sulawesi ricefishes (Teleostei: Adrianichthyidae)

  BMC Ecology and Evolution, 1, 25

  https://doi.org/

• 2025/01

  Mozer, A., Di‐Nizo, C.B., Consul, A., Huettel, B., Jäger, R., Akintayo, A., Erhardt, C., Fenner, L., Fischer, D., Forat, S., Gimnich, F., Grobe, P., Martin, S., Nathan, V., Saeed, A., von der Mark, L., Woehle, C., Olek, K., Misof, B., Astrin, J.J.

  Show more...

  FOGS: A SNPSTR Marker Database to Combat Wildlife Trafficking and a Cell Culture Bank for Ex‐Situ Conservation

  Molecular Ecology resources

  https://doi.org/

• 2025/01

  Oriowo, T.O., Chrysostomakis, I., Martin, S., Kukowka, S., Brown, T., Winkler, S., Myers, E.W., Boehne, A., Stange, M.

  Show more...

  A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae: Phoxinus phoxinus) provide evidence of haplotype diversity

  Gigascience, 14

  https://doi.org/

2024

• 2024/11

  Bakker, T.C.M., Hiermes, M., Müller, B., Martin, S., Rennison, D.J., Rick, I.P.

  Show more...

  Adaptive variation in opsin expression of sticklebacks from different photic habitats

  Hydrobiologia

  https://doi.org/

• 2024/08

  Hofmann, S., Podsiadlowski, L., Andermann, T., Matschiner, M., Baniya, C.B., Litvinchuk, S.N., Martin, S., Masroor, R., Yang, J., Zheng, Y., Jablonski, D., Schmidt, J.

  Show more...

  The last of their kind: Is the genus Scutiger (Anura: Megophryidae) a relict element of the paleo-transhimalaya biota?

  Molecular Phylogenetics and Evolution

  https://doi.org/

• 2024/08

  Hofmann, S., Rödder, D., Andermann, T., Matschiner, M., Riedel, J., Baniya, C.B., Flecks, M., Yang, J., Jiang, K., Jianping, J., Litvinchuk, S.N., Martin, S., Masroor, R., Nothnagel, M., Vershinin, V., Zheng, Y., Jablonski, D., Schmidt, J., Podsiadlowski, L.

  Show more...

  Exploring Paleogene Tibet's warm temperate environments through target enrichment and phylogenetic niche modelling of Himalayan spiny frogs (Paini, Dicroglossidae)

  Molecular ecology, 15, 33

  https://doi.org/

• 2024/07

  Frandsen, P.B., Holzenthal, R.W., Espeland, M., Breinholt, J., Thomas Thorpe, J.A., Simon, S., Kawahara, A.Y., Plotkin, D., Hotaling, S., Li, Y., Nelson, C.R., Niehuis, O., Mayer, C., Podsiadlowski, L., Donath, A., Misof, B., Moriarty Lemmon, E., Lemmon, A., Morse, J.C., Liu, S., Pauls, S.U., Zhou, X.

  Show more...

  Phylogenomics recovers multiple origins of portable case making in caddisflies (Insecta: Trichoptera), nature’s underwater architects

  Proceedings - Royal Society. Biological sciences/Proceedings - Royal Society. Biological Sciences, 2026, 291

  https://doi.org/

2023

• 2023/12

  Böhne, A., Oğuzhan, Z., Chrysostomakis, I., Vitt, S., Meuthen, D., Martin, S., Kukowka, S., Thünken, T.

  Show more...

  Evidence for selfing in a vertebrate from whole-genome sequencing

  Genome Research, 12, 33

  https://doi.org/

• 2023/07

  Frankenbach, S., Melo Clavijo, J., Brück, M., Bleidißel, S., Simon, M., Gasparoni, G., Lo Porto, C., Laetz, E.M.J., Greve, C., Donath, A., Pütz, L., Sickinger, C., Serôdio, J., Christa, G.

  Show more...

  Shedding light on starvation in darkness in the plastid-bearing sea slug Elysia viridis (Montagu, 1804)

  Marine biology, 7, 170

  https://doi.org/

2022

• 2022/06

  Joshi, M., Espeland, M., Dincă, V., Vila, R., Tahami, M.S., Dietz, L., Mayer, C., Martin, S., Dapporto, L., Mutanen, M.

  Show more...

  Delimiting continuity: Comparison of target enrichment and double digest restriction‐site associated DNA sequencing for delineating admixing parapatric Melitaea butterflies

  Systematic entomology, 4, 47

  https://doi.org/

• 2022/01

  Rola, M., Frankenbach, S., Bleidissel, S., Sickinger, C., Donath, A., Frommlet, J.C., Greve, C., Serôdio, J., Preisfeld, A., Melo Clavijo, J., Christa, G.

  Show more...

  Cladobranchia (Gastropoda, Nudibranchia) as a Promising Model to Understand the Molecular Evolution of Photosymbiosis in Animals

  Frontiers in Marine Science, 8

  https://doi.org/

2021

• 2021/08

  Melo Clavijo, J., Drews, F., Pirritano, M., Simon, M., Salhab, A., Donath, A., Frankenbach, S., Serôdio, J., Bleidißel, S., Preisfeld, A., Christa, G.

  Show more...

  The complete mitochondrial genome of the photosymbiotic sea slug Berghia stephanieae (Valdés, 2005) (Gastropoda, Nudibranchia)

  Mitochondrial DNA Part B, 8, 6

  https://doi.org/

• 2021/06

  Jasso-Martínez, J.M., Donath, A., Schulten, D., Zaldívar-Riverón, A., Sann, M.

  Show more...

  Midgut transcriptome assessment of the cockroach-hunting wasp Ampulex compressa (Apoidea: Ampulicidae)

  PloS one, 6, 16

  https://doi.org/

2020

• 2020/11

  Song, H., Béthoux, O., Shin, S., Donath, A., Letsch, H., Liu, S., McKenna, D.D., Meng, G., Misof, B., Podsiadlowski, L., Zhou, X., Wipfler, B., Simon, S.

  Show more...

  Author Correction: Phylogenomic analysis sheds light on the evolutionary pathways towards acoustic communication in Orthoptera

  Nature communications, 1, 11

  https://doi.org/

• 2020/11

  Meusemann, K., Trautwein, M., Friedrich, F., Beutel, R.G., Wiegmann, B.M., Donath, A., Podsiadlowski, L., Petersen, M., Niehuis, O., Mayer, C., Bayless, K.M., Shin, S., Liu, S., Hlinka, O., Minh, B.Q., Kozlov, A., Morel, B., Peters, R.S., Bartel, D., Grove, S., Zhou, X., Misof, B., Yeates, D.K.

  Show more...

  Are fleas highly modified Mecoptera? Phylogenomic resolution of Antliophora (Insecta: Holometabola)

  https://doi.org/

• 2020/10

  Vasilikopoulos, A., Misof, B., Meusemann, K., Lieberz, D., Flouri, T., Beutel, R.G., Niehuis, O., Wappler, T., Rust, J., Peters, R.S., Donath, A., Podsiadlowski, L., Mayer, C., Bartel, D., Böhm, A., Liu, S., Kapli, P., Greve, C., Jepson, J.E., Liu, X., Zhou, X., Aspöck, H., Aspöck, U.

  Show more...

  Correction to: An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola)

  BMC evolutionary biology, 1, 20

  https://doi.org/

• 2020/10

  Melo Clavijo, J., Frankenbach, S., Fidalgo, C., Serôdio, J., Donath, A., Preisfeld, A., Christa, G.

  Show more...

  Identification of scavenger receptors and thrombospondin‐type‐1 repeat proteins potentially relevant for plastid recognition in Sacoglossa

  Ecology and Evolution, 21, 10

  https://doi.org/

• 2020/07

  Kohli, M., Letsch, H., Greve, C., Béthoux, O., Deregnaucourt, I., Liu, S., Zhou, X., Donath, A., Mayer, C., Podsiadlowski, L., Machida, R., Niehuis, O., Rust, J., Wappler, T., Yu, X., Misof, B., Ware, J.

  Show more...

  How old are dragonflies and damselflies? Odonata (Insecta) transcriptomics resolve familial relationships

  https://doi.org/

• 2020/01

  Wipfler, B., Koehler, W., Frandsen, P.B., Donath, A., Liu, S., Machida, R., Misof, B., Peters, R.S., Shimizu, S., Zhou, X., Simon, S.

  Show more...

  Phylogenomics changes our understanding about earwig evolution

  Systematic entomology, 3, 45

  https://doi.org/

2019

• 2019/08

  Meinzer, F., Dobler, S., Donath, A., Lohr, J.N.

  Show more...

  Robust reference gene design and validation for expression studies in the large milkweed bug, Oncopeltus fasciatus, upon cardiac glycoside stress

  Gene, 710

  https://doi.org/

2018

• 2018/12

  Donath, A., Stadler, P.F.

  Show more...

  Split-inducing indels in phylogenomic analysis

  Algorithms for Molecular Biology, 1, 13

  https://doi.org/