Projekte
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1KITE
Leitung: Prof. Dr. Bernhard Misof
MAS - Projektdetailseite
Leitung: MSc Alice Scherges
Publikationen
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2025/01
Three Novel Spider Genomes Unveil Spidroin Diversification and Hox Cluster Architecture: Ryuthela nishihirai (Liphistiidae), Uloborus plumipes (Uloboridae) and Cheiracanthium punctorium (Cheiracanthiidae)
Molecular Ecology resources, 1, 25
2025/03
Ali-U-Net: A Convolutional Transformer Neural Net for Multiple Sequence Alignment of DNA Sequences. A proof of concept
2024/07
Phylogenomics recovers multiple origins of portable case making in caddisflies (Insecta: Trichoptera), nature’s underwater architects
Proceedings - Royal Society. Biological sciences/Proceedings - Royal Society. Biological Sciences, 2026, 291
2024/11
Machine learning can be as good as maximum likelihood when reconstructing phylogenetic trees and determining the best evolutionary model on four taxon alignments
Molecular Phylogenetics and Evolution, 200
2024/08
Protocol for the preparation of Wings and Wing Interference Pattern Imaging from ethanol preserved specimens
2024/08
Integrative characterisation of the Northwestern European species of Anacharis Dalman, 1823 (Hymenoptera, Cynipoidea, Figitidae) with the description of three new species
Journal of Hymenoptera Research, 97
2024/08
Chromosome-Level Genome Assembly of the Viviparous Eelpout Zoarces viviparus
Genome biology and evolution, 8, 16
2024/12
Museomics reveal origins of East African Pleophylla forest chafers and Miocene forest connectivity
Molecular Phylogenetics and Evolution, 201
2024/08
Protocol for the preparation of Wings and Wing Interference Pattern Imaging from ethanol preserved specimens v1
2024/04
Standardized nuclear markers improve and homogenize species delimitation in Metazoa (vol 14, pg 543, 2023)
Methods in Ecology and Evolution, 4, 15
2023/04
Efficient extraction of mitochondrial genes from next‐generation sequencing libraries
Methods in Ecology and Evolution, 4, 14
2023/06
A transcriptome‐based phylogeny of Scarabaeoidea confirms the sister group relationship of dung beetles and phytophagous pleurostict scarabs (Coleoptera)
Systematic entomology, 4, 48
2023/09
Multiple stressor effects of insecticide exposure and increased fine sediment deposition on the gene expression profiles of two freshwater invertebrate species
1, 35
2023/12
Metazoa‐level USCOs as markers in species delimitation and classification
Molecular Ecology resources, 3, 24
2023/10
Transcriptomic sequencing data illuminate insecticide-induced physiological stress mechanisms in aquatic non-target invertebrates
335
2023/02
Standardized nuclear markers improve and homogenize species delimitation in Metazoa
Methods in Ecology and Evolution, 2, 14
2022/04
The genetic basis of a novel reproductive strategy in Sulawesi ricefishes: How modularity and a low number of loci shape pelvic brooding
Evolution, 5, 76
2022/10
Systematics and evolution of predatory flower flies (Diptera: Syrphidae) based on exon‐capture sequencing
2, 48
2022/06
Delimiting continuity: Comparison of target enrichment and double digest restriction‐site associated DNA sequencing for delineating admixing parapatric Melitaea butterflies
Systematic entomology, 4, 47
2022/12
Impacts of multiple anthropogenic stressors on the transcriptional response of Gammarus fossarum in a mesocosm field experiment
1, 23
2021/03
Adding leaves to the Lepidoptera tree: capturing hundreds of nuclear genes from old museum specimens
Systematic entomology, 3, 46
2021/11
Evolutionary history and divergence times of Odonata (dragonflies and damselflies) revealed through transcriptomics
iScience, 11, 24
2021/02
Beyond Drosophila: resolving the rapid radiation of schizophoran flies with phylotranscriptomics
BMC biology, 1, 19
2021/03
Museomics: Phylogenomics of the Moth Family Epicopeiidae (Lepidoptera) Using Target Enrichment
Insect systematics and diversity, 2, 5
2021/07
Combining molecular datasets with strongly heterogeneous taxon coverage enlightens the peculiar biogeographic history of stoneflies (Insecta: Plecoptera)
Systematic entomology, 4, 46
2021/10
Phylogenomic analyses clarify the pattern of evolution of Adephaga (Coleoptera) and highlight phylogenetic artefacts due to model misspecification and excessive data trimming
Systematic entomology, 4, 46
2021/09
Development and evaluation of a custom bait design based on 469 single-copy protein-coding genes for exon capture of isopods (Philosciidae: Haloniscus)
PloS one, 9, 16
2021/01
Analysis of RNA-Seq, DNA Target Enrichment, and Sanger Nucleotide Sequence Data Resolves Deep Splits in the Phylogeny of Cuckoo Wasps (Hymenoptera: Chrysididae)
1, 5
2020/06
An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola)
BMC evolutionary biology, 1, 20
2020/04
A Plea for Standardized Nuclear Markers in Metazoan DNA Taxonomy
Trends in ecology & evolution, 4, 35
2020/06
Comparing diversity levels in environmental samples: DNA sequence capture and metabarcoding approaches using 18S and COI genes
Molecular ecology resources, 5, 20
2020/05
Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera
Genome biology and evolution, 7, 12
2020/10
Phylogeny, taxonomics, and ovipositor length variation of the Pteromalus albipennis species group (Hymenoptera: Chalcidoidea: Pteromalidae: Pteromalinae)
Journal of Zoological Systematics and Evolutionary Research, 2, 59
2020/12
Genome-Wide Novel Genic Microsatellite Marker Resource Development and Validation for Genetic Diversity and Population Structure Analysis of Banana
12, 11
2020/02
Analyzing drivers of speciation in the Southern Ocean using the sea spider species complex Colossendeis megalonyx as a test case
4, 43
2020/11
Are fleas highly modified Mecoptera? Phylogenomic resolution of Antliophora (Insecta: Holometabola)
2020/07
How old are dragonflies and damselflies? Odonata (Insecta) transcriptomics resolve familial relationships
2020/10
Correction to: An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola)
BMC evolutionary biology, 1, 20
2019/11
The evolution and genomic basis of beetle diversity
Proceedings of the National Academy of Sciences of the United States of America, 49, 116
2019/10
Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths
Proceedings of the National Academy of Sciences of the United States of America, 45, 116
2019/01
Evolutionary history of Polyneoptera and its implications for our understanding of early winged insects
Proceedings of the National Academy of Sciences of the United States of America, 8, 116
2019/06
Phylogenomics of the superfamily Dytiscoidea (Coleoptera: Adephaga) with an evaluation of phylogenetic conflict and systematic error
Molecular phylogenetics and evolution, 135
2019/07
Phylogenomics of the longitarsal Colossendeidae: The evolutionary history of an Antarctic sea spider radiation
136
2019/09
Combining morphological and genomic evidence to resolve species diversity and study speciation processes of the Pallenopsis patagonica (Pycnogonida) species complex
1, 16
2019/09
Cost effective microsatellite isolation and genotyping by high throughput sequencing
2, 47
2019/10
Patterns and Constraints in the Evolution of Sperm Individualization Genes in Insects, with an Emphasis on Beetles
Genes, 10, 10
2018/11
Phylogenomics and the evolution of hemipteroid insects
Proceedings of the National Academy of Sciences of the United States of America, 50, 115
2018/05
Phylogenomic analysis of Apoidea sheds new light on the sister group of bees
BMC evolutionary biology, 1, 18
2018/03
Transcriptome sequence-based phylogeny of chalcidoid wasps (Hymenoptera: Chalcidoidea) reveals a history of rapid radiations, convergence, and evolutionary success
Molecular phylogenetics and evolution, 120
2018/11
Anchored phylogenomics unravels the evolution of spider flies (Diptera, Acroceridae) and reveals discordance between nucleotides and amino acids
Molecular phylogenetics and evolution, 128
2017/04
Evolutionary History of the Hymenoptera
CB/Current biology, 7, 27
2017/01
Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus
Nature, 7638, 541
2017/11
Transcriptome and target DNA enrichment sequence data provide new insights into the phylogeny of vespid wasps (Hymenoptera: Aculeata: Vespidae)
Molecular phylogenetics and evolution, 116
2017/01
Repeats in the transcribed regions: comprehensive characterization and comparison of Citrus spp.
4, 4
2017/01
A posteriori evaluation of molecular divergence dates using empirical estimates of time-heterogeneous fossilization rates
bioRxiv
2016/03
BaitFisher: A Software Package for Multispecies Target DNA Enrichment Probe Design
Molecular biology and evolution, 7, 33
2016/12
Phylogenetic Origin and Diversification of RNAi Pathway Genes in Insects
Genome biology and evolution, 12, 8
2016/12
Transcriptomic data from panarthropods shed new light on the evolution of insulator binding proteins in insects: Insect insulator proteins
BMC genomics, 17
2016/09
Phylogenetic relationships of apoid wasps and bees inferred from analyzing target DNA enrichment data
2016/09
Inferring the evolutionary history of wasps, ants, and bees from transcriptomic data (Insecta: Hymenoptera)
2016/07
Differentiation of Trypanosoma cruzi I (TcI) and T. cruzi II (TcII) genotypes using genes encoding serine carboxypeptidases
Parasitology research, 11, 115
2015/02
Automatic selection of partitioning schemes for phylogenetic analyses using iterative k-means clustering of site rates
BMC evolutionary biology, 1, 15
2015/07
Regional differentiation and extensive hybridization between mitochondrial clades of the Southern Ocean giant sea spider Colossendeis megalonyx
Royal Society open science, 7, 2
2015/06
Genome-Wide Computational Analysis of Musa Microsatellites: Classification, Cross-Taxon Transferability, Functional Annotation, Association with Transposons & miRNAs, and Genetic Marker Potential
6, 10
2015/07
Response to Comment on “Phylogenomics resolves the timing and pattern of insect evolution”
Science, 6247, 349
2014/11
Phylogenomics resolves the timing and pattern of insect evolution
Science, 6210, 346
2014/01
Selecting optimal partitioning schemes for phylogenomic datasets
BMC evolutionary biology, 1, 14
2014/03
The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data
BMC evolutionary biology, 1, 14
2014/08
Genome Wide Characterization of Short Tandem Repeat Markers in Sweet Orange (Citrus sinensis)
PloS one, 8, 9
2013/06
Pan genome of the phytoplankton Emiliania underpins its global distribution
Nature, 7457, 499
2013/03
Isolation and characterization of nine polymorphic microsatellite markers for the deep-sea shrimp Nematocarcinus lanceopes (Crustacea: Decapoda: Caridea)
1, 6
2013/06
Morphological and genetic analyses of xeniid soft coral diversity (Octocorallia; Alcyonacea)
Organisms Diversity & Evolution, 13
2012/07
Genomic and Morphological Evidence Converge to Resolve the Enigma of Strepsiptera
CB/Current biology, 14, 22
2012/05
Long Branch Effects Distort Maximum Likelihood Phylogenies in Simulations Despite Selection of the Correct Model
PloS one, 5, 7
2012/11
Exploring Pandora's Box: Potential and Pitfalls of Low Coverage Genome Surveys for Evolutionary Biology
PloS one, 11, 7
2012/01
Are shoals of minnow Phoxinus phoxinus formed by close kin?
3, 80
2011/12
Exploiting BAC-end sequences for the mining, characterization and utility of new short sequences repeat (SSR) markers in Citrus
Molecular biology reports, 5, 39
2011/08
Molecular evolution of a chordate specific family of G protein-coupled receptors
BMC evolutionary biology, 1, 11
2011/03
The mitochondrial genome of Colossendeis megalonyx supports a basal position of Colossendeidae within the Pycnogonida
Molecular Phylogenetics and Evolution, 3, 58
2010/06
Predator-induced defences in Daphnia pulex: Selection and evaluation of internal reference genes for gene expression studies with real-time PCR
BMC molecular biology, 1, 11
2010/04
Genome-wide analysis of tandem repeats in Daphnia pulex-a comparative approach
BMC genomics, 1, 11
2010/03
Cryptic mitochondrial lineages in the widespread pycnogonid Colossendeis megalonyx Hoek, 1881 from Antarctic and Subantarctic waters
Polar biology, 3, 33
2009/01
Phylogenetic support values are not necessarily informative: the case of the Serialia hypothesis (a mollusk phylogeny)
Frontiers in zoology, 1, 6
2009/01
STAMP: Extensions to the STADEN sequence analysis package for high throughput interactive microsatellite marker design
BMC bioinformatics, 1, 10
2008/11
Multiple origins of deep-sea Asellota (Crustacea: Isopoda) from shallow waters revealed by molecular data
Proceedings - Royal Society. Biological sciences/Proceedings - Royal Society. Biological Sciences, 1658, 276
2008/09
Isolation of microsatellites from unknown genomes using known genomes as enrichment templates
Limnology and Oceanography: Methods, 9, 6
2007/01
Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects
BMC evolutionary biology, 1, 7
2006/07
Sequence characterization and expression patterns of defensin and lysozyme encoding genes from the gut of the reduviid bug Triatoma brasiliensis
Insect Biochemistry and Molecular Biology, 7, 36
2005/12
Serine proteinases of the human body louse (Pediculus humanus): sequence characterization and expression patterns
Parasitology research, 6, 97
2002/05
Towards a third-order topological invariant for magnetic fields
Journal of Physics A: Mathematical and General, 17, 35