Comparative Genomics - Vertebrates - Bonn

Our task

The comparative analysis of genomes and transcriptomes is establishing itself as an elementary component of biodiversity research. New sequencing technologies as well as developments in analysis methods and algorithms enable us to analyze samples from collections and the environment, especially from non-model organisms, as well as entire populations.

The Comparative Genomics Section at the zmb analyzes biodiversity in an evolutionary context in an attempt to better understand phenotypic and genomic changes within vertebrates.

Linking genotype and phenotype

Dr. Astrid Böhne represents this section with outstanding expertise in the areas of de novo sequencing and assembly as well as comparative genome-wide analyses.
The focus of this section is on the genomic architecture of phenotypic novelties and adaptive traits as well as speciation processes.

Projects in the Comparative Genomics Section deal in detail with population dynamics, speciation, gene flow, hybridization, adaptation and conflicts between the sexes, especially in fish.

Biodiversity

We are interested in the origin, interaction and distribution of new species and focus in particular on extremely successful animal groups that are part of speciation hotspots and (adaptive) radiations but also invasive and hybridizing species to understand drivers and threats of biodiversity genomically.

Genome research at the zmb collaborates intensively with scientists from the sections Bioinformatic Genomics and Phylogenomics.

Dr. habil. Astrid Böhne

Head of Section

Phone: +49 228 9122 365
E-Mail: a.boehne@leibniz-lib.de

Projects

All projects

SynSex - Sexual selection and conflict in Syngnathidae
Management: Dr. habil. Astrid Böhne
BIGFOOT - BIodiversity decline's Genomic FOOTprint
Management: Dr. habil. Astrid Böhne
ColLomic
Management: Dr. habil. Astrid Böhne
ERGA - The European Reference Genome Atlas
Management: Dr. habil. Astrid Böhne
BGE - Biodiversity Genomics Europe
Management: Dr. habil. Astrid Böhne
Sex chromosomes in cichlids
Management: Dr. habil. Astrid Böhne

Publications

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2025

2025/3
Möhring, J., Hüllen, S., Martin, S., Mokodongan, D.F., Wowor, D., Schwarzer, J., Herder, F.
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Increased phenotypic diversity as a consequence of ecological opportunity in the island radiation of Sulawesi ricefishes (Teleostei: Adrianichthyidae)
BMC Ecology and Evolution, 1, 25
2025/2
Wantania, L.L., Koppetsch, T., Möhring, J., Miesen, F.W., Wowor, D., Boneka, F., Herder, F.
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Sulawesi stream fish communities depend on connectivity and habitat diversity
Journal of Fish Biology, 106
2025/2
López, H., Oromí, P., Belles, X., Ylla, G., Escudero, N., Fernández, R., Böhne, A., Gut, M., Aguilera, L., Alioto, T., Ferreira, F.C., Gómez-Garrido, J., Cruz, F., Monteiro, R.
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ERGA-BGE Reference Genome of Loboptera subterranea: a cave adapted cockroach endemic to the Canary Islands
2025/2
Bein, B., Chrysostomakis, I., Arantes, L.S., Brown, T., Gerheim, C., Schell, T., Schneider, C., Leushkin, E., Chen, Z., Sigwart, J., Gonzalez, V., Wong, N.L.W.S., Santos, F.R., Blom, M.P.K., Mayer, F., Mazzoni, C.J., Böhne, A., Winkler, S., Greve, C., Hiller, M.
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Long-read sequencing and genome assembly of natural history collection samples and challenging specimens
Genome Biology, 1, 26
2025/2
Celik, T., Lokovsek, T., Buzan, E., Böhne, A., Monteiro, R., Fernandez, R., Escudero, N., Gut, M., Aguilera, L., Camara Ferreira, F., Cruz Rodriguez, F., Gomez-Garrido, J., Alioto, T.S., Bortoluzzi, C.
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ERGA-BGE genome of Coenonymphaoedippus: an IUCN endangered European butterfly species occurring in two ecotypes
2025/2
Smith, S.H., Kukowka, S., Böhne, A.
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Investigation of sex determination in African cichlids reveals lack of fixed sex chromosomes in wild populations
Journal of Evolutionary Biology
2025/2
Möhring, J., Mokodongan, D.F., Gani, A., Wowor, D., Annawaty, ., Böhne, A., Herder, F.
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A New and Unique Species of Ricefish (Teleostei: Adrianichthyidae: Oryzias) from the Lariang River Basin, Sulawesi, Indonesia, and the First Known Sympatric Ricefish Species Pair from Sulawesi Rivers
Ichthyology & Herpetology, 1, 113
2025/2
Stefen, C., Jentke, T., Birkwald, T., Chmieleski, J., Decher, J., Kaus-Thiel, A., Morkel, C., Thielen, J., Goldberg, R., Jakobitz, J., Atzig, H., Müller, A., Krause, R., Fichter, E., Wolfram, E., Twietmeyer, S., Stuckas, H.
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Large scale monitoring of terrestrial small mammals using noninvasive sampling and COI barcoding
Mammal Research
2025/1
Oriowo, T.O., Chrysostomakis, I., Martin, S., Kukowka, S., Brown, T., Winkler, S., Myers, E.W., Boehne, A., Stange, M.
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A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae: Phoxinus phoxinus) provide evidence of haplotype diversity
Gigascience, 14
2025/1
Mozer, A., Di‐Nizo, C.B., Consul, A., Huettel, B., Jäger, R., Akintayo, A., Erhardt, C., Fenner, L., Fischer, D., Forat, S., Gimnich, F., Grobe, P., Martin, S., Nathan, V., Saeed, A., von der Mark, L., Woehle, C., Olek, K., Misof, B., Astrin, J.J.
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FOGS: A SNPSTR Marker Database to Combat Wildlife Trafficking and a Cell Culture Bank for Ex‐Situ Conservation
Molecular Ecology resources
2025/1
Vila, M., Torrado-Blanco, L., Ryrholm, N., Romero-Pedreira, D., Conejero, M., Böhne, A., Monteiro, R., Marcussen, T., Oomen, R., Struck, T.H., Aguilera, L., Gut, M., Ferreira, F.C., Rodriguez, F.C., Gómez-Garrido, J., Alioto, T.S., Bortoluzzi, C.
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ERGA-BGE genome of Erebia palarica Chapman, 1905: a montane butterfly endemic to North-West Iberia
2025/1
Vila, M., Marí-Mena, N., Vila, R., Riesgo, A., García-Souto, D., Lopez-Vaamonde, C., Böhne, A., Monteiro, R., Marcussen, T., Oomen, R., Struck, T.H., Gut, M., Aguilera, L., Ferreira, F.C., Rodriguez, F.C., Gómez-Garrido, J., Alioto, T.S., Bortoluzzi, C.
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ERGA-BGE genome of the Spanish Moon MothGraellsia isabellaeGraells, 1849: a nocturnal lepidopteran protected by the Habitats Directive
2025/1
Fernandez-Alvarez, F.A., Bernal-Bajo, A., Escudero, N., Conejero, M., Riesgo, A., Fernandez, R., Monteiro, R., Bohne, A., Aguilera, L., Gut, M., Alioto, T.S., Ferreira, F.C., Cruz, F., Gomez-Garrido, J., Brown, T.
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ERGA-BGE genome of Stigmatoteuthis arcturi Robson, 1948: the jewelled squid
2025/1
Chrysostomakis, I., Mozer, A., Bruno Di-Nizo, C., Fischer, D., Sargheini, N., von der Mark, L., Huettel, B., Astrin, J.J., Töpfer, T., Böhne, A.
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A high-quality reference genome for the Ural Owl (Strix uralensis) enables investigations of cell cultures as a genomic resource for endangered species
2025/1
Pellicer, J., Garnatje, T., Vitales, D., Hidalgo, O., Valles, J., Garcia-Fernandez, A., Santos-Guerra, A., Böhne, A., Monteiro, R., Fernandez, R., Escudero, N., Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team, ., Wellcome Sanger Institute Scientific Operations: Sequencing Operations, ., Wellcome Sanger Institute Tree of Life Core Informatics Team, ., Thomas, A., Jackson, B., Wood, J.M., Howe, K., Blaxter, M., McCarthy, S., Bortoluzzi, C.
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ERGA-BGE genome of Cheirolophustagananensis: an IUCN endangered shrub endemic to the Canary Islands
2025/1
Lavergne, S., Rosa, A., Peng, C., Monteiro, R., Böhne, A., Marcussen, T., Struck, T., Oomen, R.A., Genoscope Sequencing Team, ., Moussy, A., Cruaud, C., Labadie, K., Téodori, E., Demirdjian, L., Wincker, P., Oliveira, P.H., Aury, J., Brown, T.
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ERGA-BGE genome of Androsace saussurei Dentant, Lavergne, F. C. Boucher & S. Ibanez, a recently described plant from the rooftops of Europe
2025/1
Vasileiadou, K., Manousaki, T., Dailianis, T., Skouradakis, G., Vernadou, E., Karakasi, D., Böhne, A., Monteiro, R., Fernández, R., Escudero, N., Genoscope Sequencing Team, ., Moussy, A., Cruaud, C., Labadie, K., Demirdjian, L., Istace, B., Couloux, A., Wincker, P., Oliveira, P.H., Aury, J., Bortoluzzi, C.
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ERGA-BGE genome of Pinctada radiata (Leach, 1814): one of the first Lessepsian migrants
2025/1
Galià-Camps, C., Pontes, M., Marcussen, T., Struck, T.H., Oomen, R., Böhne, A., Monteiro, R., Aguilera, L., Gut, M., Ferreira, F.C., Cruz, F., Gómez-Garrido, J., Alioto, T.S., De Panis, D.
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ERGA-BGE Reference Genome of Phyllidia flava (Nudibranchia: Phyllidiidae), a Relict Species Endemic to the Mediterranean Sea

2024

2024/12
Mc Cartney, A.M., Formenti, G., Mouton, A., De Panis, D., Marins, L.S., Leitão, H.G., Diedericks, G., Kirangwa, J., Morselli, M., Salces-Ortiz, J., Escudero, N., Iannucci, A., Natali, C., Svardal, H., Fernández, R., De Pooter, T., Joris, G., Strazisar, M., Wood, J.M.D., Herron, K.E., Seehausen, O., Watts, P.C., Shaw, F., Davey, R.P., Minotto, A., Fernández, J.M., Böhne, A., Alegria, C., Alioto, T., Alves, P.C., Amorim, I.R., Aury, J., Backstrom, N., Baldrian, P., Baltrunaite, L., Barta, E., BedHom, B., Belser, C., Bergsten, J., Bertrand, L., Bilandija, H., Binzer-Panchal, M., Bista, I., Blaxter, M., Borges, P.A.V., Dias, G.B., Bosse, M., Brown, T., Bruggmann, R., Buena-Atienza, E., Burgin, J., Buzan, E., Cariani, A., Casadei, N., Chiara, M., Chozas, S., Čiampor, F., Crottini, A., Cruaud, C., Cruz, F., Dalen, L., De Biase, A., del Campo, J., Delic, T., Dennis, A.B., Derks, M.F.L., Diroma, M.A., Djan, M., Duprat, S., Eleftheriadi, K., Feulner, P.G.D., Flot, J., Forni, G., Fosso, B., Fournier, P., Fournier-Chambrillon, C., Gabaldon, T., Garg, S., Gissi, C., Giupponi, L., Gomez-Garrido, J., González, J., Grilo, M.L., Grüning, B., Guerin, T., Guiglielmoni, N., Gut, M., Haesler, M.P., Hahn, C., Halpern, B., Harrison, P.W., Heintz, J., Hindrikson, M., Höglund, J., Howe, K., Hughes, G.M., Istace, B., Cock, M.J., Janžekovič, F., Jonsson, Z.O., Joye-Dind, S., Koskimäki, J.J., Krystufek, B., Kubacka, J., Kuhl, H., Kusza, S., Labadie, K., Lähteenaro, M., Lantz, H., Lavrinienko, A., Leclère, L., Lopes, R.J., Madsen, O., Magdelenat, G., Magoga, G., Manousaki, T., Mappes, T., Marques, J.P., Redondo, G.I.M., Maumus, F., McCarthy, S.A., Megens, H., Melo-Ferreira, J., Mendes, S.L., Montagna, M., Moreno, J., Mosbech, M., Moura, M., Musilova, Z., Myers, E., Nash, W.J., Nater, A., Nicholson, P., Niell, M., Nijland, R., Noel, B., Noren, K., Oliveira, P.H., Olsen, R., Ometto, L., Oomen, R.A., Ossowski, S., Palinauskas, V., Palsson, S., Panibe, J.P., Pauperio, J., Pavlek, M., Payen, E., Pawlowska, J., Pellicer, J., Pesole, G., Pimenta, J., Pippel, M., Pirttilä, A.M., Poulakakis, N., Rajan, J., M.C. Rego, R., Resendes, R., Resl, P., Riesgo, A., Rodin-Morch, P., Soares, A.E.R., Fernandes, C.R., Romeiras, M.M., Roxo, G., Rüber, L., Ruiz-Lopez, M.J., Saarma, U., da Silva, L.P., Sim-Sim, M., Soler, L., Sousa, V.C., Santos, C.S., Spada, A., Stefanovic, M., Steger, V., Stiller, J., Stöck, M., Struck, T.H., Sudasinghe, H., Tapanainen, R., Tellgren-Roth, C., Trindade, H., Tukalenko, Y., Urso, I., Vacherie, B., Van Belleghem, S.M., Van Oers, K., Vargas-Chavez, C., Velickovic, N., Vella, N., Vella, A., Vernesi, C., Vicente, S., Villa, S., Pettersson, O.V., Volckaert, F.A.M., Voros, J., Wincker, P., Winkler, S., Ciofi, C., Waterhouse, R.M., Mazzoni, C.J.
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The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
npj Biodiversity, 1, 3
2024/12
Böhne, A., Fernández, R., Leonard, J.A., McCartney, A.M., McTaggart, S., Melo-Ferreira, J., Monteiro, R., Oomen, R.A., Vinnere Pettersson, O., Struck, T.H.
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Contextualising samples: supporting reference genomes of European biodiversity through sample and associated metadata collection
npj Biodiversity, 1, 3
2024/12
Dietz, L., Kukowka, S., Eberle, J., Mayer, C., Niehuis, O., Podsiadlowski, L., Ahrens, D.
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Museomics reveal origins of East African Pleophylla forest chafers and Miocene forest connectivity
Molecular Phylogenetics and Evolution, 201
2024/12
Lozano-Fernandez, J., Domènech, M., Ibos, A., Marcussen, T., Struck, T.H., Oomen, R., Böhne, A., Monteiro, R., Aguilera, L., Gut, M., Câmara Ferreira, F., Cruz, F., Gómez-Garrido, J., Alioto, T.S., De Panis, D.
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ERGA-BGE Reference Genome of Gluvia dorsalis: An Endemic Sun Spider from Iberian Arid Regions
2024/12
Janžekovič, F., Buzan, E., Bončina, A., Escudero, N., Fernández, R., Böhne, A., Monteiro, R., Aguilera, L., Gut, M., Ferreira, F.C., Cruz, F., Gómez-Garrido, J., Alioto, T.S., Haggerty, L., Martin, F., De Panis, D.
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ERGA-BGE Reference Genome of the Striped Field Mouse (Apodemus agrarius), a Widespread and Abundant Species in Central and Eastern Europe
2024/11
Buzan, E., Bončina, A., Pokorny, B., Escudero, N., Fernández, R., Böhne, A., Monteiro, R., Gut, M., Câmara Ferreira, F., Cruz, F., Gómez-Garrido, J., Alioto, T.S., Haggerty, L., Martin, F., De Panis, D.
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ERGA-BGE Reference Genome of the Northern chamois (Rupicapra rupicapra): Europe’s most abundant mountain ungulate
2024/10
Peters, R., Rduch, V.
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Employees

All employees

MSc Aryadevi Anitha Shaji
zmb Comparative Genomics - Vertebrates Doctoral candidate
Phone: +49 228 9122 407
E-mail: a.shaji@leibniz-lib.de
Dr. habil. Astrid Böhne
zmb Comparative Genomics - Vertebrates Scientist
Phone: +49 228 9122 365
E-mail: a.boehne@leibniz-lib.de
MSc Nina Casillas
zmb Comparative Genomics - Vertebrates Doctoral candidate
Phone: +49 228 9122 379
E-mail: n.casillas@leibniz-lib.de
MSc Ioannis Chrysostomakis
zmb Comparative Genomics - Vertebrates Doctoral candidate
Phone: +49 228 9122 369
E-mail: i.chrysostomakis@leibniz-lib.de
MSc Kevin Hsiung
zmb Comparative Genomics - Vertebrates Doctoral candidate
Phone: +49 228 9122 369
E-mail: k.hsiung@leibniz-lib.de
Sandra Kukowka
zmb Comparative Genomics - Vertebrates
Phone: +49 228 9122 343
E-mail: s.kukowka@leibniz-lib.de
Dr. Annika Mozer
zmb Comparative Genomics - Vertebrates Postdoctoral researcher
Phone: +49 228 9122 355
E-mail: a.mozer@leibniz-lib.de
Jan Möhring
ztm Ichthyology Bonn Doctoral candidate
Phone: +49 228 9122 431
E-mail: j.moehring@leibniz-lib.de
MSc Sophie Smith
zmb Comparative Genomics - Vertebrates Doctoral candidate
Phone: +49 228 9122 369
E-mail: s.smith@leibniz-lib.de
Rita Mafalda Soares Monteiro
zmb Comparative Genomics - Vertebrates Scientist
Phone: +49 228 9122 369
E-mail: r.monteiro@leibniz-lib.de