Centre for Molecular Biodiversity Research (zmb)

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2025

• 2025/3

  Kück, P., Wilkinson, M., Romahn, J., Seidel, N., Meusemann, K., Wägele, J.

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  Unraveling myriapod evolution: sealion, a novel quartet-based approach for evaluating phylogenetic uncertainty

  NAR Genomics and Bioinformatics, 1, 7

  https://doi.org/

• 2025/3

  Arsic, P., Mayer, C.

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  Ali-U-Net: A Convolutional Transformer Neural Net for Multiple Sequence Alignment of DNA Sequences. A proof of concept

  https://doi.org/

• 2025/3

  Möhring, J., Hüllen, S., Martin, S., Mokodongan, D.F., Wowor, D., Schwarzer, J., Herder, F.

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  Increased phenotypic diversity as a consequence of ecological opportunity in the island radiation of Sulawesi ricefishes (Teleostei: Adrianichthyidae)

  BMC Ecology and Evolution, 1, 25

  https://doi.org/

• 2025/3

  STÜBEN, P.E., JAPARASHVILI, S., DALLAKYAN, M., ASTRIN, J.J.

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  Three new species of flightless Cryptorhynchinae from the Caucasus (Coleoptera: Curculionidae)

  Zootaxa, 2, 5601

• 2025/2

  Wantania, L.L., Koppetsch, T., Möhring, J., Miesen, F.W., Wowor, D., Boneka, F., Herder, F.

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  Sulawesi stream fish communities depend on connectivity and habitat diversity

  Journal of Fish Biology, 106

  https://doi.org/

• 2025/2

  López, H., Oromí, P., Belles, X., Ylla, G., Escudero, N., Fernández, R., Böhne, A., Gut, M., Aguilera, L., Alioto, T., Ferreira, F.C., Gómez-Garrido, J., Cruz, F., Monteiro, R.

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  ERGA-BGE Reference Genome of Loboptera subterranea: a cave adapted cockroach endemic to the Canary Islands

  https://doi.org/

• 2025/2

  Bein, B., Chrysostomakis, I., Arantes, L.S., Brown, T., Gerheim, C., Schell, T., Schneider, C., Leushkin, E., Chen, Z., Sigwart, J., Gonzalez, V., Wong, N.L.W.S., Santos, F.R., Blom, M.P.K., Mayer, F., Mazzoni, C.J., Böhne, A., Winkler, S., Greve, C., Hiller, M.

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  Long-read sequencing and genome assembly of natural history collection samples and challenging specimens

  Genome Biology, 1, 26

  https://doi.org/

• 2025/2

  Celik, T., Lokovsek, T., Buzan, E., Böhne, A., Monteiro, R., Fernandez, R., Escudero, N., Gut, M., Aguilera, L., Camara Ferreira, F., Cruz Rodriguez, F., Gomez-Garrido, J., Alioto, T.S., Bortoluzzi, C.

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  ERGA-BGE genome of Coenonymphaoedippus: an IUCN endangered European butterfly species occurring in two ecotypes

  https://doi.org/

• 2025/2

  Smith, S.H., Kukowka, S., Böhne, A.

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  Investigation of sex determination in African cichlids reveals lack of fixed sex chromosomes in wild populations

  Journal of Evolutionary Biology

  https://doi.org/

• 2025/2

  Monsen, O., Gronvold, L., Datsomor, A., Harvey, T.N., Kijas, J., Suh, A.S., Hvidsten, T.R., Sandve, S.R.

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  The role of transposon activity in shapingcis-regulatory element evolution after whole genome duplication

  Genome Research

  https://doi.org/

• 2025/2

  Möhring, J., Mokodongan, D.F., Gani, A., Wowor, D., Annawaty, ., Böhne, A., Herder, F.

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  A New and Unique Species of Ricefish (Teleostei: Adrianichthyidae: Oryzias) from the Lariang River Basin, Sulawesi, Indonesia, and the First Known Sympatric Ricefish Species Pair from Sulawesi Rivers

  Ichthyology & Herpetology, 1, 113

  https://doi.org/

• 2025/2

  Pollard, K., Leiva, C., Rouzé, H., Lemer, S.

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  Genomic Insights From Natural History Collections Reveal Cryptic Speciation in Coral Guard Crabs (Family: Trapeziidae)

  Ecology and Evolution, 2, 15

  https://doi.org/

• 2025/2

  Rieseberg, T.P., Dadras, A., Darienko, T., Post, S., Herrfurth, C., Fürst-Jansen, J.M.R., Hohnhorst, N., Petroll, R., Rensing, S.A., Pröschold, T., de Vries, S., Irisarri, I., Feussner, I., de Vries, J.

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  Time-resolved oxidative signal convergence across the algae–embryophyte divide

  Nature communications, 1, 16

  https://doi.org/

• 2025/1

  Oriowo, T.O., Chrysostomakis, I., Martin, S., Kukowka, S., Brown, T., Winkler, S., Myers, E.W., Boehne, A., Stange, M.

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  A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae: Phoxinus phoxinus) provide evidence of haplotype diversity

  Gigascience, 14

  https://doi.org/

• 2025/1

  Schöneberg, Y., Audisio, T.L., Ben Hamadou, A., Forman, M., Král, J., Kořínková, T., Líznarová, E., Mayer, C., Prokopcová, L., Krehenwinkel, H., Prost, S., Kennedy, S.

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  Three Novel Spider Genomes Unveil Spidroin Diversification and Hox Cluster Architecture: Ryuthela nishihirai (Liphistiidae), Uloborus plumipes (Uloboridae) and Cheiracanthium punctorium (Cheiracanthiidae)

  Molecular Ecology resources, 1, 25

  https://doi.org/

• 2025/1

  Schafran, P., Hauser, D.A., Nelson, J.M., Xu, X., Mueller, L.A., Kulshrestha, S., Smalley, I., de Vries, S., Irisarri, I., de Vries, J., Davies, K., Villarreal, J.C.A., Li, F.

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  Pan-phylum genomes of hornworts reveal conserved autosomes but dynamic accessory and sex chromosomes

  Nature Plants

  https://doi.org/

• 2025/1

  Li, R., Leiva, C., Lemer, S., Kirkendale, L., Li, J.

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  Photosymbiosis shaped animal genome architecture and gene evolution as revealed in giant clams

  Communications Biology, 1, 8

  https://doi.org/

• 2025/1

  Mozer, A., Di‐Nizo, C.B., Consul, A., Huettel, B., Jäger, R., Akintayo, A., Erhardt, C., Fenner, L., Fischer, D., Forat, S., Gimnich, F., Grobe, P., Martin, S., Nathan, V., Saeed, A., von der Mark, L., Woehle, C., Olek, K., Misof, B., Astrin, J.J.

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  FOGS: A SNPSTR Marker Database to Combat Wildlife Trafficking and a Cell Culture Bank for Ex‐Situ Conservation

  Molecular Ecology resources

  https://doi.org/

• 2025/1

  Vila, M., Torrado-Blanco, L., Ryrholm, N., Romero-Pedreira, D., Conejero, M., Böhne, A., Monteiro, R., Marcussen, T., Oomen, R., Struck, T.H., Aguilera, L., Gut, M., Ferreira, F.C., Rodriguez, F.C., Gómez-Garrido, J., Alioto, T.S., Bortoluzzi, C.

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  ERGA-BGE genome of Erebia palarica Chapman, 1905: a montane butterfly endemic to North-West Iberia

  https://doi.org/

• 2025/1

  Vila, M., Marí-Mena, N., Vila, R., Riesgo, A., García-Souto, D., Lopez-Vaamonde, C., Böhne, A., Monteiro, R., Marcussen, T., Oomen, R., Struck, T.H., Gut, M., Aguilera, L., Ferreira, F.C., Rodriguez, F.C., Gómez-Garrido, J., Alioto, T.S., Bortoluzzi, C.

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  ERGA-BGE genome of the Spanish Moon MothGraellsia isabellaeGraells, 1849: a nocturnal lepidopteran protected by the Habitats Directive

  https://doi.org/

• 2025/1

  Fernandez-Alvarez, F.A., Bernal-Bajo, A., Escudero, N., Conejero, M., Riesgo, A., Fernandez, R., Monteiro, R., Bohne, A., Aguilera, L., Gut, M., Alioto, T.S., Ferreira, F.C., Cruz, F., Gomez-Garrido, J., Brown, T.

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  ERGA-BGE genome of Stigmatoteuthis arcturi Robson, 1948: the jewelled squid

  https://doi.org/

• 2025/1

  Macphee, A., Oriowo, T.O., Sternberg, N., Stange, M.

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  Comparison of whole genome sequencing performance from fish swabs and fin clips

  BMC Research Notes, 1, 18

  https://doi.org/

• 2025/1

  Giles, E.C., González, V.L., Carimán, P., Leiva, C., Suescún, A.V., Lemer, S., Guillemin, M.L., Ortiz‐Barrientos, D., Saenz‐Agudelo, P.

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  Comparative Genomics Points to Ecological Drivers of Genomic Divergence Among Intertidal Limpets

  Molecular Ecology resources

  https://doi.org/

• 2025/1

  Hadrava, J., Klečka, J., Moran, K., Klečková, I., Kelso, S., Etzbauer, C., Skevington, J.H., Mengual, X.

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  The evolution of wasp mimicry and biogeography in the genus Temnostoma (Diptera: Syrphidae)

  Molecular Phylogenetics and Evolution

  https://doi.org/

• 2025/1

  Chrysostomakis, I., Mozer, A., Bruno Di-Nizo, C., Fischer, D., Sargheini, N., von der Mark, L., Huettel, B., Astrin, J.J., Töpfer, T., Böhne, A.

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  A high-quality reference genome for the Ural Owl (Strix uralensis) enables investigations of cell cultures as a genomic resource for endangered species

  https://doi.org/

• 2025/1

  Pellicer, J., Garnatje, T., Vitales, D., Hidalgo, O., Valles, J., Garcia-Fernandez, A., Santos-Guerra, A., Böhne, A., Monteiro, R., Fernandez, R., Escudero, N., Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team, ., Wellcome Sanger Institute Scientific Operations: Sequencing Operations, ., Wellcome Sanger Institute Tree of Life Core Informatics Team, ., Thomas, A., Jackson, B., Wood, J.M., Howe, K., Blaxter, M., McCarthy, S., Bortoluzzi, C.

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  ERGA-BGE genome of Cheirolophustagananensis: an IUCN endangered shrub endemic to the Canary Islands

  https://doi.org/

• 2025/1

  Lavergne, S., Rosa, A., Peng, C., Monteiro, R., Böhne, A., Marcussen, T., Struck, T., Oomen, R.A., Genoscope Sequencing Team, ., Moussy, A., Cruaud, C., Labadie, K., Téodori, E., Demirdjian, L., Wincker, P., Oliveira, P.H., Aury, J., Brown, T.

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  ERGA-BGE genome of Androsace saussurei Dentant, Lavergne, F. C. Boucher & S. Ibanez, a recently described plant from the rooftops of Europe

  https://doi.org/

• 2025/1

  Vasileiadou, K., Manousaki, T., Dailianis, T., Skouradakis, G., Vernadou, E., Karakasi, D., Böhne, A., Monteiro, R., Fernández, R., Escudero, N., Genoscope Sequencing Team, ., Moussy, A., Cruaud, C., Labadie, K., Demirdjian, L., Istace, B., Couloux, A., Wincker, P., Oliveira, P.H., Aury, J., Bortoluzzi, C.

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  ERGA-BGE genome of Pinctada radiata (Leach, 1814): one of the first Lessepsian migrants

  https://doi.org/

• 2025/1

  Galià-Camps, C., Pontes, M., Marcussen, T., Struck, T.H., Oomen, R., Böhne, A., Monteiro, R., Aguilera, L., Gut, M., Ferreira, F.C., Cruz, F., Gómez-Garrido, J., Alioto, T.S., De Panis, D.

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  ERGA-BGE Reference Genome of Phyllidia flava (Nudibranchia: Phyllidiidae), a Relict Species Endemic to the Mediterranean Sea

  https://doi.org/

2024

• 2024/12

  Li, X., Jayaprasad, S., Einarsdottir, E., Cooper, S.J.B., Suh, A., Kawakami, T., Palacios-Gimenez, O.M.

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  Chromosome-level genome assembly of the morabine grasshopper Vandiemenella viatica19

  Scientific data, 1, 11

  https://doi.org/