Centre for Molecular Biodiversity Research (zmb)

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2025

• 2025/5

  Jeffries, D., Benvenuto, C., Böhne, A., Fraisse, C., Garcia, S., Jay, P., Kratochvíl, L., McDonough-Goldstein, C.E., Ruiz-Herrera, A., Sotero-Caio, C.G., Valenzuela, N., Wilson, M.A., Tree of Sex Consortium, ., Jaron, K.S.

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  The Tree of Sex consortium: A global initiative for studying the evolution of reproduction in eukaryotes

  Journal of Evolutionary Biology

  https://doi.org/

• 2025/5

  Lozano-Fernandez, J., Domènech, M., Ibos, A., Marcussen, T., Struck, T.H., Oomen, R., Böhne, A., Monteiro, R., Aguilera, L., Gut, M., Câmara Ferreira, F., Cruz, F., Gómez-Garrido, J., Alioto, T.S., Haggerty, L., Sinha, S., Martin, F., De Panis, D.

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  ERGA-BGE reference genome of Gluviadorsalis: An endemic sun spider from Iberian arid regions

  https://doi.org/

• 2025/5

  Letsch, H., Greve, C., Hundsdoerfer, A.K., Irisarri, I., Moore, J.M., Espeland, M., Wanke, S., Arifin, U., Blom, M.P.K., Corrales, C., Donath, A., Fritz, U., Köhler, G., Kück, P., Lemer, S., Mengual, X., Salas, N.M., Meusemann, K., Palandačić, A., Printzen, C., Sigwart, J.D., Silva-Brandão, K.L., Simões, M., Stange, M., Suh, A., Szucsich, N., Tilic, E., Töpfer, T., Böhne, A., Janke, A., Pauls, S.

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  Type genomics: a Framework for integrating Genomic Data into Biodiversity and Taxonomic research

  Systematic Biology

  https://doi.org/

• 2025/4

  Hadrava, J., Klečka, J., Moran, K., Klečková, I., Kelso, S., Etzbauer, C., Skevington, J.H., Mengual, X.

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  The evolution of wasp mimicry and biogeography in the genus Temnostoma (Diptera: Syrphidae)

  Molecular Phylogenetics and Evolution, 205

  https://doi.org/

• 2025/4

  Carranza, S., Fernández-Guiberteau, D., Blasón, L., Palma-Guerrero, J., Fernández, R., Monteiro, R., Böhne, A., Aguilera, L., Gut, M., Câmara Ferreira, F., Cruz, F., Gómez-Garrido, J., Alioto, T., Haggerty, L., Sinha, S., Martin, F., De Panis, D.

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  ERGA-BGE reference genome of the Western Montpellier Snake (Malpolonmonspessulanus), a key species for evolutionary and venom studies

  https://doi.org/

• 2025/4

  Buzan, E., Bončina, A., Pokorny, B., Escudero, N., Fernández, R., Böhne, A., Monteiro, R., Aguilera, L., Gut, M., Câmara Ferreira, F., Cruz, F., Gómez-Garrido, J., Alioto, T., Haggerty, L., Martin, F., De Panis, D.

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  ERGA-BGE Reference Genome of the Northern chamois (Rupicaprarupicapra): Europe’s most abundant mountain ungulate

  https://doi.org/

• 2025/4

  Janžekovič, F., Buzan, E., Bončina, A., Escudero, N., Fernández, R., Böhne, A., Monteiro, R., Aguilera, L., Gut, M., Câmara Ferreira, F., Cruz, F., Gómez-Garrido, J., Alioto, T., Haggerty, L., Martin, F., De Panis, D.

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  ERGA-BGE reference genome of the Striped Field Mouse (Apodemusagrarius), a widespread and abundant species in Central and Eastern Europe

  https://doi.org/

• 2025/4

  Vasileiadou, K., Manousaki, T., Dailianis, T., Skouradakis, G., Vernadou, E., Karakasi, D., Böhne, A., Monteiro, R., Fernández, R., Escudero, N., Team, G.S., Moussy, A., Cruaud, C., Labadie, K., Demirdjian, L., Istace, B., Couloux, A., Wincker, P., Oliveira, P.H., Aury, J., Haggerty, L., Sinha, S., Martin, F., Bortoluzzi, C.

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  ERGA-BGE genome of Pinctadaradiata (Leach, 1814): one of the first Lessepsian migrants

  https://doi.org/

• 2025/4

  Vasileiadou, K., Manousaki, T., Dailianis, T., Skouradakis, G., Vernadou, E., Karakasi, D., Böhne, A., Monteiro, R., Fernández, R., Escudero, N., Team, G.S., Moussy, A., Cruaud, C., Labadie, K., Demirdjian, L., Téodori, E., Duprat, S., Wincker, P., Oliveira, P.H., Aury, J., Haggerty, L., Sinha, S., Martin, F., Bortoluzzi, C.

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  ERGA-BGE genome of Noah`s Ark shell (Arcanoae Linnaeus, 1758), a Mediterranean bivalve species

  https://doi.org/

• 2025/4

  Pellicer, J., Garnatje, T., Vitales, D., Hidalgo, O., Vallès, J., García-Fernández, A., Santos-Guerra, A., Böhne, A., Monteiro, R., Fernández, R., Escudero, N., Samples and Laboratory Team, W.S.I.T.o.L.M., Sequencing Operations, W.S.I.S.O., Tree of Life Core Informatics Team, W.S.I., Thomas, A., Jackson, B., Wood, J.M., Howe, K., Blaxter, M., McCarthy, S., Haggerty, L., Sinha, S., Martin, F., Bortoluzzi, C.

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  ERGA-BGE genome of Cheirolophustagananensis: an IUCN endangered shrub endemic to the Canary Islands

  https://doi.org/

• 2025/4

  Schell, T., Greve, C., Podsiadlowski, L.

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  Establishing genome sequencing and assembly for non-model and emerging model organisms: a brief guide

  Frontiers in Zoology, 1, 22

  https://doi.org/

• 2025/4

  De Keyzer, E.L.R., Herder, F., Böhne, A., Campuzano Jiménez, F., Burskaia, V., Kukowka, S., Tracey, A., Denton, A., Oatley, G., Wellcome Sanger Institute Tree of Life programme, ., Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, ., Tree of Life Core Informatics collective, ., Mokodongan, D.F., Wowor, D., Svardal, H.

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  Multiple instances of river-lake introgression in the adaptive radiation of sailfin silversides in Wallace’s Dreampond

  https://doi.org/

• 2025/4

  Čelik, T., Lokovšek, T., Bužan, E., Böhne, A., Monteiro, R., Fernández, R., Escudero, N., Gut, M., Aguilera, L., Câmara Ferreira, F., Cruz, F., Gómez-Garrido, J., Alioto, T.S., Haggerty, L., Sinha, S., Martin, F., Bortoluzzi, C.

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  ERGA-BGE genome of Coenonymphaoedippus: an IUCN endangered European butterfly species occurring in two ecotypes

  https://doi.org/

• 2025/4

  Schlebusch, S.A., Trifonov, V., Halenková, Z., Klianitskaya, M., Dedukh, D., Ruiz Herrera, A., Álvarez González, L., Pujol Infantes, G., Hřibová, E., Andjel, L., Bartoš, O., Pajer, P., Tichopád, T., Kulik, D., Kotusz, J., Kaštánková Doležálková, M., Böhne, A., Marta, A., Horna, P., Reifová, R., Guiguen, Y., Pačes, J., Janko, K.

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  Sex Chromosome Turnover and Structural Interspecific Genome Divergence Shapes Meiotic Outcomes in HybridizingCobitis

  https://doi.org/

• 2025/3

  Kück, P., Wilkinson, M., Romahn, J., Seidel, N., Meusemann, K., Wägele, J.

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  Unraveling myriapod evolution: sealion, a novel quartet-based approach for evaluating phylogenetic uncertainty

  NAR Genomics and Bioinformatics, 1, 7

  https://doi.org/

• 2025/3

  Arsic, P., Mayer, C.

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  Ali-U-Net: A Convolutional Transformer Neural Net for Multiple Sequence Alignment of DNA Sequences. A proof of concept

  https://doi.org/

• 2025/3

  Möhring, J., Hüllen, S., Martin, S., Mokodongan, D.F., Wowor, D., Schwarzer, J., Herder, F.

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  Increased phenotypic diversity as a consequence of ecological opportunity in the island radiation of Sulawesi ricefishes (Teleostei: Adrianichthyidae)

  BMC Ecology and Evolution, 1, 25

  https://doi.org/

• 2025/3

  STÜBEN, P.E., JAPARASHVILI, S., DALLAKYAN, M., ASTRIN, J.J.

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  Three new species of flightless Cryptorhynchinae from the Caucasus (Coleoptera: Curculionidae)

  Zootaxa, 2, 5601

• 2025/3

  Lymberakis, P., Karakasi, D., Papadimitrakis, M., Monteiro, R., Böhne, A., Fernández, R., Escudero, N., Aury, J., Moussy, A., Cruaud, C., Labadie, K., Mangenot, S., Belser, C., Demirdjian, L., Sinha, S., Haggerty, L., Martin, F., Wincker, P., Oliveira, P.H., Brown, T.

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  ERGA-BGE genome of Acomysminous (Bate, 1906): the Crete spiny mouse, endemic to the island of Crete, Greece

  https://doi.org/

• 2025/3

  Ventura, M., Franch, N., Fernández, R., Palma-Guerrero, J., Böhne, A., Monteiro, R., Aguilera, L., Gut, M., Alioto, T.S., Câmara Ferreira, F., Cruz, F., Gómez-Garrido, J., Haggerty, L., Martin, F., Brown, T.

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  ERGA-BGE genome of Valenciahispanica (Valenciennes, 1826): a critically endangered Iberian toothcarp

  https://doi.org/

• 2025/3

  STÜBEN, P.E., JAPARASHVILI, S., DALLAKYAN, M., ASTRIN, J.J.

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  Three new species of flightless Cryptorhynchinae from the Caucasus (Coleoptera: Curculionidae)

  Zootaxa, 2, 5601

  https://doi.org/

• 2025/3

  Anthony, C.J., Lemer, S., Raymundo, L.J., Rouzé, H.

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  Restoration innovation: Fusing microbial memories to engineer coral resilience

  One earth, 3, 8

  https://doi.org/

• 2025/2

  Wantania, L.L., Koppetsch, T., Möhring, J., Miesen, F.W., Wowor, D., Boneka, F., Herder, F.

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  Sulawesi stream fish communities depend on connectivity and habitat diversity

  Journal of Fish Biology, 106

  https://doi.org/

• 2025/2

  López, H., Oromí, P., Belles, X., Ylla, G., Escudero, N., Fernández, R., Böhne, A., Gut, M., Aguilera, L., Alioto, T., Ferreira, F.C., Gómez-Garrido, J., Cruz, F., Monteiro, R.

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  ERGA-BGE reference genome of Lobopterasubterranea: a cave adapted cockroach endemic to the Canary Islands

  https://doi.org/

• 2025/2

  Bein, B., Chrysostomakis, I., Arantes, L.S., Brown, T., Gerheim, C., Schell, T., Schneider, C., Leushkin, E., Chen, Z., Sigwart, J., Gonzalez, V., Wong, N.L.W.S., Santos, F.R., Blom, M.P.K., Mayer, F., Mazzoni, C.J., Böhne, A., Winkler, S., Greve, C., Hiller, M.

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  Long-read sequencing and genome assembly of natural history collection samples and challenging specimens

  Genome Biology, 1, 26

  https://doi.org/

• 2025/2

  Smith, S.H., Kukowka, S., Böhne, A.

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  Investigation of sex determination in African cichlids reveals lack of fixed sex chromosomes in wild populations

  Journal of Evolutionary Biology

  https://doi.org/

• 2025/2

  Monsen, O., Gronvold, L., Datsomor, A., Harvey, T.N., Kijas, J., Suh, A.S., Hvidsten, T.R., Sandve, S.R.

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  The role of transposon activity in shapingcis-regulatory element evolution after whole genome duplication

  Genome Research

  https://doi.org/

• 2025/2

  Möhring, J., Mokodongan, D.F., Gani, A., Wowor, D., Annawaty, ., Böhne, A., Herder, F.

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  A New and Unique Species of Ricefish (Teleostei: Adrianichthyidae: Oryzias) from the Lariang River Basin, Sulawesi, Indonesia, and the First Known Sympatric Ricefish Species Pair from Sulawesi Rivers

  Ichthyology & Herpetology, 1, 113

  https://doi.org/

• 2025/2

  Pollard, K., Leiva, C., Rouzé, H., Lemer, S.

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  Genomic Insights From Natural History Collections Reveal Cryptic Speciation in Coral Guard Crabs (Family: Trapeziidae)

  Ecology and Evolution, 2, 15

  https://doi.org/

• 2025/2

  Rieseberg, T.P., Dadras, A., Darienko, T., Post, S., Herrfurth, C., Fürst-Jansen, J.M.R., Hohnhorst, N., Petroll, R., Rensing, S.A., Pröschold, T., de Vries, S., Irisarri, I., Feussner, I., de Vries, J.

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  Time-resolved oxidative signal convergence across the algae–embryophyte divide

  Nature communications, 1, 16

  https://doi.org/